Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2674 chr3:124482222 C/T 2.19E-6 278 26.37 26.27 16.4 KM Plot
KIRP rs2698773 chr10:134153255 C/G 0.000103 282 26.37 25.23 5.67 KM Plot
KIRP rs2704544 chr2:130351634 C/T 0 286 25.63 27.45 6.7 KM Plot
KIRP rs2710419 chr12:45261606 C/T 0.000112 289 20.33 28.17 24.3 KM Plot
KIRP rs2718084 chr7:128897342 T/C 4.02E-5 281 16.83 26.58 26.37 KM Plot
KIRP rs2739514 chr1:231514806 G/A 0.00011 287 20.25 26.7 25.23 KM Plot
KIRP rs2744777 chr1:26012517 A/C 1.61E-8 286 24.73 29.77 9.77 KM Plot
KIRP rs2748393 chr10:134157683 A/C 0.000182 288 26.2 25.23 5.67 KM Plot
KIRP rs2749716 chr1:231486908 T/C 0.000125 287 21.97 26.3 25.37 KM Plot
KIRP rs2749717 chr1:231489353 G/T 0.00015 287 21.28 26.4 25.37 KM Plot
KIRP rs2761947 chr13:46925274 C/T 6.2E-7 289 25.53 26.38 23.23 KM Plot
KIRP rs2771992 chr9:135712272 C/T 1.48E-5 289 24.3 29.03 19.53 KM Plot
KIRP rs2790049 chr1:165743523 A/G 9.43E-5 283 17.13 42.92 23.32 KM Plot
KIRP rs2790872 chr1:231540543 A/T 0.000109 283 20.25 26.77 25.75 KM Plot
KIRP rs2803431 chr9:78939701 G/C 6.32E-5 285 25.62 28.22 7.27 KM Plot